Publications

2016

  • Mark F. Adams, Jed Brown, Matthew G. Knepley, and Ravi Samtaney. Segmental refinement: a multigrid technique for data locality. SIAM Journal on Scientific Computing, 38(4):C426–C440, 2016. arXiv:1406.7808, doi:10.1137/140975127.
    [BibTeX]
  • Jed Brown. Higher standards on the control of numerical accuracy. 2016. Whitepaper accepted to the DOE Advancing X-cutting Ideas for Computational Climate Science (AXICCS).
    PDF ] [BibTeX]
  • Dmitry Duplyakin, Jed Brown, and Robert Ricci. Active learning in performance analysis. In Proceedings of the IEEE Cluster Conference. September 2016. URL: http://www.flux.utah.edu/paper/duplyakin-cluster16.
    PDF ] [BibTeX]

2015

  • Satish Balay, Jed Brown, Matthew G. Knepley, Lois McInnes, and Barry Smith. Software Engineering for Science, chapter Providing Mixed Language and Legacy Support within a Library. Taylor & Francis, 2015.
    [BibTeX]
  • Jed Brown, Matthew G. Knepley, and Barry F. Smith. Run-time extensibility and librarization of simulation software. IEEE Computing in Science and Engineering, 17(1):38–45, 2015. doi:10.1109/MCSE.2014.95.
    PDF ] [BibTeX]
  • Eric C Cyr, Eric Phipps, Michael A Heroux, Jed Brown, Ethan T Coon, Mark Hoemmen, Robert C Kirby, Tzanio V Kolev, James C Sutherland, and Christian R Trott. Algorithms and abstractions for assembly in pde codes: workshop report. Technical Report SAND2015-1379, Sandia National Laboratory, 2015.
    PDF ] [BibTeX]
  • Debojyoti Ghosh, Emil M. Constantinescu, and Jed Brown. Efficient implementation of nonlinear compact schemes on massively parallel platforms. SIAM Journal on Scientific Computing, 37(3):C354–C383, 2015. Also preprint ANL/MCS-P5121-0414. doi:10.1137/140989261.
    PDF ] [BibTeX]
  • Matthew G. Knepley, Jed Brown, Lois Curfman McInnes, Barry Smith, Karl Rupp, and Mark Adams. Exascale computing without threads. 2015. Whitepaper for the DOE High Performance Computing Operational Review (HPCOR) on Scientific Software Architecture for Portability and Performance.
    PDF ] [BibTeX]
  • Matthew G. Knepley, Jed Brown, Lois Curfman McInnes, Barry Smith, Karl Rupp, and Mark Adams. Overview of the PETSc library. 2015. Whitepaper for the DOE High Performance Computing Operational Review (HPCOR) on Scientific Software Architecture for Portability and Performance.
    PDF ] [BibTeX]
  • David A. May, Jed Brown, and Laetitia Le Pourhiet. A scalable, matrix-free multigrid preconditioner for finite element discretizations of heterogeneous Stokes flow. Computer Methods in Applied Mechanics and Engineering, 290(0):496–523, 2015. doi:10.1016/j.cma.2015.03.014.
    [BibTeX]
  • Karl Rupp, Satish Balay, Jed Brown, Matthew G. Knepley, Lois Curfman McInnes, and Barry F. Smith. On the evolution of user support topics in computational science and engineering software. ArXiv e-prints, 2015. Whitepaper for Computational Science & Engineering Software Sustainability and Productivity Challenges. arXiv:1510.01122.
    [BibTeX]

2014

  • M. F. Adams, J. Brown, J. Shalf, B. Van Straalen, E. Strohmaier, and S. Williams. HPGMG 1.0: a benchmark for ranking high performance computing systems. Technical Report LBNL-6630E, LBNL, Berkeley, 2014. doi:10.2172/1131029.
    [BibTeX]
  • Satish Balay, Shrirang Abhyankar, Mark F. Adams, Jed Brown, Peter Brune, Kris Buschelman, Victor Eijkhout, William D. Gropp, Dinesh Kaushik, Matthew G. Knepley, Lois Curfman McInnes, Karl Rupp, Barry F. Smith, and Hong Zhang. PETSc users manual. Technical Report ANL-95/11 - Revision 3.5, Argonne National Laboratory, 2014. URL: http://www.mcs.anl.gov/petsc.
    [BibTeX]
  • Debojyoti Ghosh, Emil M. Constantinescu, and Jed Brown. Scalable nonlinear compact schemes. Technical Report ANL/MCS-TM-340, Argonne National Laboratory, 2014.
    PDF ] [BibTeX]
  • Dave A. May, Jed Brown, and Laetitia Le Pourhiet. pTatin3D: High-performance methods for long-term lithospheric dynamics. In Proceedings of SC14: International Conference for High Performance Computing, Networking, Storage and Analysis. ACM, 2014.
    PDF ] [BibTeX]

2013

  • Mark F. Adams, Jed Brown, and Matt Knepley. Low-communication techniques for extreme-scale multilevel solvers. In Exascale Mathematics Workshop, Aug 21–22, Washington, DC. DOE Office of Advanced Scientific Computing Research, 2013.
    [BibTeX]
  • Jennifer Arrigo, Jed Brown, Louise Kellogg, Lorraine Hwang, Scott Peckham, and David Tarboton. EarthCube modeling workshop results. Technical Report, Computational Infrastructure for Geodynamics, 2013. URL: http://geodynamics.org/cig/community/workshops/Earthcube13/ExecSummary.
    [BibTeX]
  • Jed Brown. Vectorization, communication aggregation, and reuse in stochastic and temporal dimensions. In Exascale Mathematics Workshop, Aug 21–22, Washington, DC. DOE Office of Advanced Scientific Computing Research, 2013.
    [BibTeX]
  • Jed Brown and Peter Brune. Low-rank quasi-Newton updates for robust Jacobian lagging in Newton-type methods. In International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering, 2554–2565. 2013.
    PDF ] [BibTeX]
  • Jed Brown, Barry F. Smith, and Aron Ahmadia. Achieving textbook multigrid efficiency for hydrostatic ice flow. SIAM Journal on Scientific Computing, 35(2):359–375, 2013. Also preprint ANL/MCS-P743-1298. doi:10.1137/110834512.
    [BibTeX]
  • Barry F. Smith Jed Brown, Matthew G. Knepley. Run-time extensibility: anything less is unsustainable. In Workshop towards Sustainable Software for Science: Practice and Experiences (WSSSPE). 2013. doi:10.6084/m9.figshare.791571.
    [BibTeX]
  • David E. Keyes, Lois Curfman McInnes, Carol Woodward, William Gropp, Eric Myra, Michael Pernice, John Bell, Jed Brown, Alain Clo, Jeffrey Connors, Emil Constantinescu, Don Estep, Kate Evans, Charbel Farhat, Ammar Hakim, Glenn Hammond, Glen Hansen, Judith Hill, Tobin Isaac, Xiangmin Jiao, Kirk Jordan, Dinesh Kaushik, Efthimios Kaxiras, Alice Koniges, Kihwan Lee, Aaron Lott, Qiming Lu, John Magerlein, Reed Maxwell, Michael McCourt, Miriam Mehl, Roger Pawlowski, Amanda Peters Randles, Daniel Reynolds, Beatrice Rivière, Ulrich Rüde, Tim Scheibe, John Shadid, Brendan Sheehan, Mark Shephard, Andrew Siegel, Barry Smith, Xianzhu Tang, Cian Wilson, and Barbara Wohlmuth. Multiphysics simulations: challenges and opportunities. International Journal of High Performance Computing Applications, 27(1):4–83, Feb 2013. Special issue. doi:10.1177/1094342012468181.
    [BibTeX]
  • Matthew G. Knepley, Jed Brown, Lois Curfman McInnes, and Barry F. Smith. Accurately citing software and algorithms used in publications. In Workshop towards Sustainable Software for Science: Practice and Experiences (WSSSPE). 2013. doi:10.6084/m9.figshare.785731.
    [BibTeX]
  • Tareq M. Malas, Aron J. Ahmadia, Jed Brown, John A. Gunnels, and David E. Keyes. Optimizing the performance of streaming numerical kernels on the IBM BlueGene/P PowerPC 450 processor. International Journal of High Performance Computing Applications, 27(2):193–209, 2013. doi:10.1177/1094342012444795.
    [BibTeX]

2012

  • Mark Adams, Jed Brown, and Barry F. Smith. Exascale programming models must vigorously enable libraries. In DOE Exascale Research Conference. 2012.
    [BibTeX]
  • Mihai Anitescu, Jed Brown, Paul Fischer, Sven Leyffer, Lois Curfman McInnes, Todd Munson, and Barry F. Smith. Exascale co-design opportunities: Multilevel approaches for hierarchical models, architectures, algorithms, and software. In DOE Exascale Research Conference. 2012.
    [BibTeX]
  • Rodney Biezuner, Jed Brown, Grey Ercole, and Eder Martins. Computing the first eigenpair of the $p$-Laplacian via inverse iteration of sublinear supersolutions. Journal of Scientific Computing, 52:180–201, 2012. doi:10.1007/s10915-011-9540-0.
    [BibTeX]
  • J. Brown, M. G. Knepley, D. A. May, L. C. McInnes, and B. F. Smith. Composable linear solvers for multiphysics. In Proceeedings of the 11th International Symposium on Parallel and Distributed Computing (ISPDC 2012), 55–62. IEEE Computer Society, 2012. doi:10.1109/ISPDC.2012.16.
    [BibTeX]
  • Jed Brown. User-defined non-blocking collectives must make progress. IEEE Technical Committee on Scalable Computing, 2012. URL: https://www.ieeetcsc.org/activities/blog/user_defined_nonblocking_collectives_must_make_progress.
    [BibTeX]
  • L. Ridgway Scott, Jed Brown, George W. Bergantz, Dan Cooley, Clint Dawson, Maarten de Hoop, Donald Estep, Natasha Flyer, Efi Foufoula-Georgiou, Michael Ghil, Matthew Knepley, Randall J. LeVeque, Lek-Heng Lim, Serge Prudhomme, Adrian Sandu, Frederik J. Simons, Philip B. Stark, Michael Stein, Seth Stein, Toshiro Tanimoto, Daniel Tartakovsky, Jonathan Weare, Robert Weiss, Grady B. Wright, and Dave Yuen. Fostering interactions between the geosciences and mathematics, statistics, and computer science. Technical Report 2012-02, University of Chicago, 2012.
    PDF ] [BibTeX]

2010

  • Jason M. Amundson, Mark Fahnestock, Martin Truffer, Jed Brown, Martin P. Lüthi, and Roman J. Motyka. Ice mélange dynamics and implications for terminus stability, Jakobshavn Isbræ, Greenland. J. Geophys. Res, 115:F01005, 2010. doi:10.1029/2009JF001405.
    [BibTeX]
  • Jed Brown. Efficient nonlinear solvers for nodal high-order finite elements in 3D. Journal of Scientific Computing, 45:48–63, 2010. doi:10.1007/s10915-010-9396-8.
    PDF ] [BibTeX]

2009

  • E. Bueler and J. Brown. Shallow shelf approximation as a “sliding law” in a thermomechanically coupled ice sheet model. Journal of Geophysical Research-Earth Surface, 114(F3):F03008, 2009. arXiv:0810.3449, doi:10.1029/2008JF001179.
    [BibTeX]
  • K. Burckhardt, D. Szczerba, J. Brown, K. Muralidhar, and G. Székely. Fast implicit simulation of oscillatory flow in human abdominal bifurcation using a schur complement preconditioner. In H. Sips, D. Epema, and H.-X. Lin, editors, Euro-Par 2009 Parallel Processing, volume 5704 of Lecture Notes in Computer Science, 747–759. Springer, August 2009. doi:10.1007/978-3-642-03869-3_70.
    [BibTeX]

2007

  • E. Bueler, J. Brown, and C. Lingle. Exact solutions to the thermomechanically coupled shallow ice approximation: effective tools for verification. J. Glaciol, 53:499–516, 2007. doi:10.3189/002214307783258396.
    [BibTeX]
  • E. Bueler, C.S. Lingle, and J. Brown. Fast computation of a viscoelastic deformable Earth model for ice-sheet simulations. Ann. Glaciol, 46:97–105, 2007.
    [BibTeX]

2005

  • E. Bueler, C. S. Lingle, J. A. Kallen-Brown, D. N. Covey, and L. N. Bowman. Exact solutions and numerical verification for isothermal ice sheets. J. Glaciol., 51(173):291–306, 2005. doi:10.3189/172756505781829449.
    [BibTeX]